IL_5DM8_100

3D structure

PDB id

5DM8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

5DM8|1|X|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DM8_100 not in the Motif Atlas

Geometric match to IL_7A0S_098

Geometric discrepancy: 0.0703

The information below is about IL_7A0S_098

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5DM8|1|X|G|2737
5DM8|1|X|A|2738
5DM8|1|X|U|2739
5DM8|1|X|A|2740
5DM8|1|X|A|2741
5DM8|1|X|C|2742
*
5DM8|1|X|G|2762
5DM8|1|X|G|2763
5DM8|1|X|A|2764
5DM8|1|X|A|2765
5DM8|1|X|G|2766
5DM8|1|X|C|2767

Current chains

Chain X

Deinococcus radiodurans R1 chromosome 1, complete sequence

Nearby chains

Chain E

50S ribosomal protein L6

Chain G

50S ribosomal protein L13