IL_5DM8_105
3D structure
- PDB id
- 5DM8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAACC*GAAAC
- Length
- 11 nucleotides
- Bulged bases
- 5DM8|1|Y|A|27
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DM8_105 not in the Motif Atlas
- Homologous match to IL_7A0S_103
- Geometric discrepancy: 0.3219
- The information below is about IL_7A0S_103
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_18472.5
- Basepair signature
- cWW-tSW-R-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
5DM8|1|Y|G|25
5DM8|1|Y|G|26
5DM8|1|Y|A|27
5DM8|1|Y|A|28
5DM8|1|Y|C|29
5DM8|1|Y|C|30
*
5DM8|1|Y|G|58
5DM8|1|Y|A|59
5DM8|1|Y|A|60
5DM8|1|Y|A|61
5DM8|1|Y|C|62
Current chains
- Chain Y
- Deinococcus radiodurans R1 chromosome 1, complete sequence
Nearby chains
- Chain D
- 50S ribosomal protein L5
- Chain L
- 50S ribosomal protein L18
Coloring options: