IL_5DO4_004

3D structure

PDB id

5DO4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thrombin-RNA aptamer complex

Experimental method

X-RAY DIFFRACTION

Resolution

1.86 Å

Loop

Sequence

GAA(CFZ)AA*(UMS)A(CFZ)

Length

9 nucleotides

Bulged bases

5DO4|1|A|CFZ|6, 5DO4|1|A|A|7

QA status

Modified nucleotides: CFZ, UMS

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15698.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

5DO4|1|A|G|3
5DO4|1|A|A|4
5DO4|1|A|A|5
5DO4|1|A|CFZ|6
5DO4|1|A|A|7
5DO4|1|A|A|8
*
5DO4|1|A|UMS|21
5DO4|1|A|A|22
5DO4|1|A|CFZ|23

Current chains

Chain A

RNA (25-MER)

Nearby chains

Chain H

Thrombin heavy chain