IL_5DO5_002

3D structure

PDB id

5DO5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 2'-Fluoro-RNA bearing a phosphorodithioate

Experimental method

X-RAY DIFFRACTION

Resolution

1.2 Å

Loop

Sequence

U(AF2)(AF2)(2SG)C*GCGA

Length

9 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48444.2

Basepair signature

cWW-cWW-cWW-cWW-L

Number of instances in this motif group

4

Unit IDs

5DO5|1|A|U|108||A
5DO5|1|A|AF2|109||B
5DO5|1|A|AF2|109||A
5DO5|1|A|2SG|110
5DO5|1|A|C|111
*
5DO5|1|A|G|102||||2_556
5DO5|1|A|C|103||||2_556
5DO5|1|A|G|104||||2_556
5DO5|1|A|A|105||||2_556

Current chains

Chain A

RNA (5'-R(*CP*GP*CP*GP*AP*AP*UP*UP*(AF2)P*(2SG)P*CP*G)-3')

Nearby chains