Motif IL_48444.2 Version IL_48444.2 of this group appears in releases 3.89 to 3.89
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 3-6 | 3-7 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7A0S_058 | 7A0S | 0.5123 | 2 | X | LSU rRNA | C | 1514 | U | 1515 | A | 1516 | C | 1517 | * | G | 1503 | G | 1504 | U | 1505 | G | 1508 | ncWW | cWW | cWW | |
| 2 | IL_1MFQ_001 | 1MFQ | 0.2745 | 1 | A | SRP RNA | U | 117 | A | 118 | A | 119 | G | 120 | * | C | 230 | A | 231 | G | 232 | A | 234 | cWW | cWW | ||
| 3 | IL_1L9A_001 | 1L9A | 0.0000 | 1 | B | SRP RNA | U | 117 | A | 118 | A | 119 | G | 120 | * | C | 230 | A | 231 | G | 232 | A | 234 | cWW | ncWw | cWW | |
| 4 | IL_5DO5_002 | 5DO5 | 0.7068 | 1 | A | RNA (12-mer) | G | 102||||2_556 | C | 103||||2_556 | G | 104||||2_556 | A | 105||||2_556 | * | U | 108||A | AF2 | 109||B | AF2 | 109||A | C | 111 | cWW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAAG*CAGUA | 2 |
| CUAC*GGUCAG | 1 |
| GCGA*U(AF2)(AF2)(2SG)C | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*AGU | 2 |
| UA*GUCA | 1 |
| CG*(AF2)(AF2)(2SG) | 1 |
Release history
| Release | 3.89 |
|---|---|
| Date | 2024-10-09 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-cWW-cWW-cWW-L
- Heat map statistics
- Min 0.27 | Avg 0.44 | Max 0.74
Coloring options: