IL_5DOX_017

3D structure

PDB id

5DOX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

5DOX|1|1A|G|801, 5DOX|1|1A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DOX_017 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0521

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

5DOX|1|1A|G|674
5DOX|1|1A|A|675
5DOX|1|1A|A|676
5DOX|1|1A|A|677
5DOX|1|1A|C|678
*
5DOX|1|1A|G|799
5DOX|1|1A|A|800
5DOX|1|1A|G|801
5DOX|1|1A|A|802
5DOX|1|1A|U|803
5DOX|1|1A|A|804
5DOX|1|1A|G|805
5DOX|1|1A|C|806

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1P

50S ribosomal protein L15