IL_5DOX_052

3D structure

PDB id

5DOX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

5DOX|1|1A|A|1379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DOX_052 not in the Motif Atlas

Homologous match to IL_7RQB_052

Geometric discrepancy: 0.0493

The information below is about IL_7RQB_052

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

5DOX|1|1A|C|1351
5DOX|1|1A|U|1352
5DOX|1|1A|A|1353
5DOX|1|1A|A|1354
5DOX|1|1A|G|1355
*
5DOX|1|1A|C|1376
5DOX|1|1A|G|1377
5DOX|1|1A|A|1378
5DOX|1|1A|A|1379
5DOX|1|1A|G|1380

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1D

50S ribosomal protein L2