IL_5DOX_081

3D structure

PDB id

5DOX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUC*GGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DOX_081 not in the Motif Atlas

Geometric match to IL_6CZR_157

Geometric discrepancy: 0.222

The information below is about IL_6CZR_157

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_08069.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

5DOX|1|1A|G|2101
5DOX|1|1A|U|2102
5DOX|1|1A|C|2103
*
5DOX|1|1A|G|2186
5DOX|1|1A|G|2187
5DOX|1|1A|C|2188

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1I

50S ribosomal protein L9