3D structure

PDB id
5DOX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CUGUGAAC*GGGAG
Length
13 nucleotides
Bulged bases
5DOX|1|1A|U|2132, 5DOX|1|1A|A|2158
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5DOX_086 not in the Motif Atlas
Geometric match to IL_5G4T_002
Geometric discrepancy: 0.3969
The information below is about IL_5G4T_002
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_70923.9
Basepair signature
cWW-tSS-tSH-L-tHS-tHS-cWW
Number of instances in this motif group
27

Unit IDs

5DOX|1|1A|C|2129
5DOX|1|1A|U|2130
5DOX|1|1A|G|2131
5DOX|1|1A|U|2132
5DOX|1|1A|G|2133
5DOX|1|1A|A|2134
5DOX|1|1A|A|2135
5DOX|1|1A|C|2136
*
5DOX|1|1A|G|2155
5DOX|1|1A|G|2156
5DOX|1|1A|G|2157
5DOX|1|1A|A|2158
5DOX|1|1A|G|2159

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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