IL_5DOX_087

3D structure

PDB id

5DOX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCCCC*GGGGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCCCC,GGGGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DOX_087 not in the Motif Atlas

Geometric match to IL_7VYX_008

Geometric discrepancy: 0.3916

The information below is about IL_7VYX_008

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

5DOX|1|1A|C|2136
5DOX|1|1A|C|2137
5DOX|1|1A|C|2138
5DOX|1|1A|C|2139
5DOX|1|1A|C|2140
*
5DOX|1|1A|G|2151
5DOX|1|1A|G|2152
5DOX|1|1A|G|2153
5DOX|1|1A|G|2154
5DOX|1|1A|G|2155

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains