3D structure

PDB id
5DOX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
UUGAG*CAAGAUGAG
Length
14 nucleotides
Bulged bases
5DOX|1|1A|G|2780
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5DOX_102 not in the Motif Atlas
Homologous match to IL_7RQB_102
Geometric discrepancy: 0.0501
The information below is about IL_7RQB_102
Detailed Annotation
tSH-tHS-tHW
Broad Annotation
tSH-tHS-tHW
Motif group
IL_04638.1
Basepair signature
cWW-tSH-tHW-tHS-cSH-cWW-L
Number of instances in this motif group
5

Unit IDs

5DOX|1|1A|U|2636
5DOX|1|1A|U|2637
5DOX|1|1A|G|2638
5DOX|1|1A|A|2639
5DOX|1|1A|G|2640
*
5DOX|1|1A|C|2774
5DOX|1|1A|A|2775
5DOX|1|1A|A|2776
5DOX|1|1A|G|2777
5DOX|1|1A|A|2778
5DOX|1|1A|U|2779
5DOX|1|1A|G|2780
5DOX|1|1A|A|2781
5DOX|1|1A|G|2782

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 1E
50S ribosomal protein L3
Chain 1N
50S ribosomal protein L13

Coloring options:


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