3D structure

PDB id
5DOX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CUACCC*GGAUG
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5DOX_123 not in the Motif Atlas
Geometric match to IL_8C3A_401
Geometric discrepancy: 0.3807
The information below is about IL_8C3A_401
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_02934.1
Basepair signature
cWW-L-R-L-cWW-cWW-cWW
Number of instances in this motif group
2

Unit IDs

5DOX|1|1a|C|132
5DOX|1|1a|U|133
5DOX|1|1a|A|134
5DOX|1|1a|C|135
5DOX|1|1a|C|136
5DOX|1|1a|C|137
*
5DOX|1|1a|G|226
5DOX|1|1a|G|227
5DOX|1|1a|A|228
5DOX|1|1a|U|229
5DOX|1|1a|G|230

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1p
30S ribosomal protein S16
Chain 1t
30S ribosomal protein S20

Coloring options:


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