IL_8C3A_401

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUAUUU*AUUCA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02934.1

Basepair signature

cWW-L-R-L-cWW-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8C3A|1|CM|U|117
8C3A|1|CM|U|118
8C3A|1|CM|A|119
8C3A|1|CM|U|120
8C3A|1|CM|U|121
8C3A|1|CM|U|122
*
8C3A|1|CM|A|293
8C3A|1|CM|U|294
8C3A|1|CM|U|295
8C3A|1|CM|C|296
8C3A|1|CM|A|297

Current chains

Chain CM

18S

Nearby chains

Chain CR

40S ribosomal protein S4

Chain CV

40S ribosomal protein S8