IL_5DOX_126
3D structure
- PDB id
- 5DOX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GACAAC*GCUAAUC
- Length
- 13 nucleotides
- Bulged bases
- 5DOX|1|1a|U|173
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DOX_126 not in the Motif Atlas
- Homologous match to IL_4LFB_009
- Geometric discrepancy: 0.1017
- The information below is about IL_4LFB_009
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_12745.1
- Basepair signature
- cWW-tWH-tWH-tHW-tHW-cWW
- Number of instances in this motif group
- 1
Unit IDs
5DOX|1|1a|G|148
5DOX|1|1a|A|149
5DOX|1|1a|C|150
5DOX|1|1a|A|151
5DOX|1|1a|A|152
5DOX|1|1a|C|153
*
5DOX|1|1a|G|168
5DOX|1|1a|C|169
5DOX|1|1a|U|170
5DOX|1|1a|A|171
5DOX|1|1a|A|172
5DOX|1|1a|U|173
5DOX|1|1a|C|174
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1t
- 30S ribosomal protein S20
Coloring options: