IL_5DOX_162

3D structure

PDB id

5DOX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

5DOX|1|1a|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DOX_162 not in the Motif Atlas

Homologous match to IL_4LFB_044

Geometric discrepancy: 0.14

The information below is about IL_4LFB_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_76319.5

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

5DOX|1|1a|U|1052
5DOX|1|1a|G|1053
5DOX|1|1a|C|1054
5DOX|1|1a|A|1055
5DOX|1|1a|U|1056
*
5DOX|1|1a|A|1204
5DOX|1|1a|U|1205
5DOX|1|1a|G|1206

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1c

30S ribosomal protein S3

Chain 1n

30S ribosomal protein S14 type Z