IL_5DOX_172

3D structure

PDB id

5DOX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DOX_172 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.1354

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

5DOX|1|1a|C|1303
5DOX|1|1a|G|1304
5DOX|1|1a|G|1305
5DOX|1|1a|A|1306
5DOX|1|1a|U|1307
5DOX|1|1a|U|1308
*
5DOX|1|1a|A|1329
5DOX|1|1a|U|1330
5DOX|1|1a|G|1331
5DOX|1|1a|A|1332
5DOX|1|1a|A|1333
5DOX|1|1a|G|1334

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1m

30S ribosomal protein S13

Chain 1u

30S ribosomal protein Thx