IL_5DOX_225

3D structure

PDB id

5DOX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5DOX|1|2A|U|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DOX_225 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.0789

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

5DOX|1|2A|C|1208
5DOX|1|2A|G|1209
5DOX|1|2A|A|1210
5DOX|1|2A|U|1211
5DOX|1|2A|G|1212
5DOX|1|2A|A|1213
5DOX|1|2A|A|1214
5DOX|1|2A|G|1215
*
5DOX|1|2A|U|1234
5DOX|1|2A|G|1235
5DOX|1|2A|G|1236
5DOX|1|2A|A|1237
5DOX|1|2A|G|1238

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2U

50S ribosomal protein L20