IL_5DOX_253

3D structure

PDB id

5DOX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UCAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DOX_253 not in the Motif Atlas

Homologous match to IL_7RQB_074

Geometric discrepancy: 0.0837

The information below is about IL_7RQB_074

Detailed Annotation

UAA/GAN with extra pair

Broad Annotation

No text annotation

Motif group

IL_90318.1

Basepair signature

cWW-tSH-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

5DOX|1|2A|U|1851
5DOX|1|2A|C|1852
5DOX|1|2A|A|1853
5DOX|1|2A|A|1854
5DOX|1|2A|G|1855
*
5DOX|1|2A|C|1887
5DOX|1|2A|G|1888
5DOX|1|2A|A|1889
5DOX|1|2A|A|1890
5DOX|1|2A|G|1891

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains