IL_5DOY_009

3D structure

PDB id

5DOY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGGAC*GUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DOY_009 not in the Motif Atlas

Homologous match to IL_8VTW_009

Geometric discrepancy: 0.2655

The information below is about IL_8VTW_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_45612.4

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

14

Unit IDs

5DOY|1|1A|C|272|||J
5DOY|1|1A|G|274
5DOY|1|1A|G|275
5DOY|1|1A|A|278
5DOY|1|1A|C|279
*
5DOY|1|1A|G|361
5DOY|1|1A|U|362
5DOY|1|1A|G|363

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains