IL_5DOY_015
3D structure
- PDB id
- 5DOY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- UUAAG*CGGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DOY_015 not in the Motif Atlas
- Homologous match to IL_7RQB_016
- Geometric discrepancy: 0.0517
- The information below is about IL_7RQB_016
- Detailed Annotation
- AAA cross-strand stack
- Broad Annotation
- AAA cross-strand stack
- Motif group
- IL_17136.1
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 24
Unit IDs
5DOY|1|1A|U|606
5DOY|1|1A|U|607
5DOY|1|1A|A|608
5DOY|1|1A|A|609
5DOY|1|1A|G|610
*
5DOY|1|1A|C|618
5DOY|1|1A|G|619
5DOY|1|1A|G|620
5DOY|1|1A|A|621
5DOY|1|1A|G|622
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1F
- 50S Ribosomal Protein L4
- Chain 1P
- 50S Ribosomal Protein L15
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