IL_5DOY_147

3D structure

PDB id

5DOY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGGAG*UC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DOY_147 not in the Motif Atlas

Homologous match to IL_4LFB_032

Geometric discrepancy: 0.0555

The information below is about IL_4LFB_032

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.3

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

5DOY|1|1a|G|774
5DOY|1|1a|G|775
5DOY|1|1a|G|776
5DOY|1|1a|A|777
5DOY|1|1a|G|778
*
5DOY|1|1a|U|804
5DOY|1|1a|C|805

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA

Chain 1D

50S Ribosomal Protein L2

Chain 1k

30S Ribosomal Protein S11