IL_5DOY_152
3D structure
- PDB id
- 5DOY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GCA*UUCCC
- Length
- 8 nucleotides
- Bulged bases
- 5DOY|1|1a|C|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DOY_152 not in the Motif Atlas
- Homologous match to IL_5J7L_041
- Geometric discrepancy: 0.1268
- The information below is about IL_5J7L_041
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_47078.3
- Basepair signature
- cWW-cWS-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
5DOY|1|1a|G|933
5DOY|1|1a|C|934
5DOY|1|1a|A|935
*
5DOY|1|1a|U|1380
5DOY|1|1a|U|1381
5DOY|1|1a|C|1382
5DOY|1|1a|C|1383
5DOY|1|1a|C|1384
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1g
- 30S Ribosomal Protein S7
- Chain 1i
- 30S Ribosomal Protein S9
- Chain 1v
- mRNA
- Chain 1x
- Transfer RNA; tRNA
- Chain 1y
- Transfer RNA; tRNA
Coloring options: