IL_5DOY_264

3D structure

PDB id

5DOY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CAG*CGGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DOY_264 not in the Motif Atlas

Homologous match to IL_7RQB_088

Geometric discrepancy: 0.2933

The information below is about IL_7RQB_088

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

5DOY|1|2A|C|2297
5DOY|1|2A|A|2298
5DOY|1|2A|G|2299
*
5DOY|1|2A|C|2317
5DOY|1|2A|G|2318
5DOY|1|2A|G|2319
5DOY|1|2A|A|2320
5DOY|1|2A|G|2321

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 20

50S Ribosomal Protein L27

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2G

50S Ribosomal Protein L5

Chain 2S

50S Ribosomal Protein L18