IL_5DOY_291
3D structure
- PDB id
- 5DOY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- UUCCC*GAACA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DOY_291 not in the Motif Atlas
- Geometric match to IL_7RQB_114
- Geometric discrepancy: 0.1354
- The information below is about IL_7RQB_114
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.6
- Basepair signature
- cWW-cWS-L-tSW-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
5DOY|1|2B|U|34
5DOY|1|2B|U|35
5DOY|1|2B|C|36
5DOY|1|2B|C|37
5DOY|1|2B|C|38
*
5DOY|1|2B|G|44
5DOY|1|2B|A|45
5DOY|1|2B|A|46
5DOY|1|2B|C|47
5DOY|1|2B|A|48
Current chains
- Chain 2B
- 5S Ribosomal RNA
Nearby chains
- Chain 24
- 50S Ribosomal Protein L31
- Chain 2A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2G
- 50S Ribosomal Protein L5
- Chain 2S
- 50S Ribosomal Protein L18
Coloring options: