IL_5DOY_322

3D structure

PDB id

5DOY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

5DOY|1|2a|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DOY_322 not in the Motif Atlas

Homologous match to IL_4LFB_029

Geometric discrepancy: 0.0803

The information below is about IL_4LFB_029

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

5DOY|1|2a|G|662
5DOY|1|2a|A|663
5DOY|1|2a|G|664
5DOY|1|2a|A|665
5DOY|1|2a|G|666
*
5DOY|1|2a|U|740
5DOY|1|2a|G|741
5DOY|1|2a|G|742
5DOY|1|2a|U|743

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2f

30S Ribosomal Protein S6

Chain 2o

30S Ribosomal Protein S15

Chain 2r

30S Ribosomal Protein S18