IL_5DOY_343
3D structure
- PDB id
- 5DOY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- UACAAAG*CAAAAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DOY_343 not in the Motif Atlas
- Homologous match to IL_4LFB_051
- Geometric discrepancy: 0.1185
- The information below is about IL_4LFB_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_12056.1
- Basepair signature
- cWW-L-R-R-bif-cWW
- Number of instances in this motif group
- 2
Unit IDs
5DOY|1|2a|U|1247
5DOY|1|2a|A|1248
5DOY|1|2a|C|1249
5DOY|1|2a|A|1250
5DOY|1|2a|A|1251
5DOY|1|2a|A|1252
5DOY|1|2a|G|1253
*
5DOY|1|2a|C|1284
5DOY|1|2a|A|1285
5DOY|1|2a|A|1286
5DOY|1|2a|A|1287
5DOY|1|2a|A|1288
5DOY|1|2a|A|1289
5DOY|1|2a|G|1290
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2g
- 30S Ribosomal Protein S7
- Chain 2i
- 30S Ribosomal Protein S9
- Chain 2j
- 30S Ribosomal Protein S10
- Chain 2n
- 30S Ribosomal Protein S14
- Chain 2u
- 30S Ribosomal Protein THX
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