IL_5E7K_023

3D structure

PDB id

5E7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

5E7K|1|13|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5E7K_023 not in the Motif Atlas

Homologous match to IL_6CZR_134

Geometric discrepancy: 0.1256

The information below is about IL_6CZR_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.5

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

5E7K|1|13|C|569
5E7K|1|13|G|570
5E7K|1|13|U|571
5E7K|1|13|A|572
5E7K|1|13|A|573
5E7K|1|13|A|574
5E7K|1|13|G|575
*
5E7K|1|13|C|880
5E7K|1|13|G|881

Current chains

Chain 13

16S rRNA

Nearby chains

Chain 3I

30S ribosomal protein S12

Chain 4E

30S ribosomal protein S5

Chain 8I

30S ribosomal protein S17