3D structure

PDB id
5E7K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GAGC*GUCC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5E7K_095 not in the Motif Atlas
Geometric match to IL_1MFQ_004
Geometric discrepancy: 0.203
The information below is about IL_1MFQ_004
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

5E7K|1|14|G|952
5E7K|1|14|A|953
5E7K|1|14|G|954
5E7K|1|14|C|955
*
5E7K|1|14|G|962
5E7K|1|14|U|963
5E7K|1|14|C|964
5E7K|1|14|C|965

Current chains

Chain 14
23S rRNA

Nearby chains

Chain 1J
5S ribosomal RNA; 5S rRNA
Chain 45
50S ribosomal protein L16

Coloring options:


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