3D structure

PDB id
5E7K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CUAAG*CGAAG
Length
10 nucleotides
Bulged bases
5E7K|1|14|A|1156
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5E7K_097 not in the Motif Atlas
Homologous match to IL_7RQB_036
Geometric discrepancy: 0.079
The information below is about IL_7RQB_036
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_89002.2
Basepair signature
cWW-tWH-L-tHS-cWW
Number of instances in this motif group
20

Unit IDs

5E7K|1|14|C|998
5E7K|1|14|U|999
5E7K|1|14|A|1000
5E7K|1|14|A|1001
5E7K|1|14|G|1002
*
5E7K|1|14|C|1153
5E7K|1|14|G|1154
5E7K|1|14|A|1155
5E7K|1|14|A|1156
5E7K|1|14|G|1157

Current chains

Chain 14
23S rRNA

Nearby chains

Chain 1J
5S ribosomal RNA; 5S rRNA
Chain 85
50S ribosomal protein L20
Chain 95
50S ribosomal protein L21
Chain H5
50S ribosomal protein L30

Coloring options:


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