IL_5E7K_105

3D structure

PDB id

5E7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5E7K|1|14|U|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5E7K_105 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.1182

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

5E7K|1|14|C|1208
5E7K|1|14|G|1209
5E7K|1|14|A|1210
5E7K|1|14|U|1211
5E7K|1|14|G|1212
5E7K|1|14|A|1213
5E7K|1|14|A|1214
5E7K|1|14|G|1215
*
5E7K|1|14|U|1234
5E7K|1|14|G|1235
5E7K|1|14|G|1236
5E7K|1|14|A|1237
5E7K|1|14|G|1238

Current chains

Chain 14

23S rRNA

Nearby chains

Chain 85

50S ribosomal protein L20