IL_5E7K_170

3D structure

PDB id

5E7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

5E7K|1|14|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5E7K_170 not in the Motif Atlas

Homologous match to IL_7A0S_098

Geometric discrepancy: 0.0845

The information below is about IL_7A0S_098

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5E7K|1|14|G|2737
5E7K|1|14|A|2738
5E7K|1|14|U|2739
5E7K|1|14|A|2740
5E7K|1|14|A|2741
5E7K|1|14|C|2742
*
5E7K|1|14|G|2762
5E7K|1|14|G|2763
5E7K|1|14|A|2764
5E7K|1|14|A|2765
5E7K|1|14|G|2766
5E7K|1|14|C|2767

Current chains

Chain 14

23S rRNA

Nearby chains

Chain 15

50S ribosomal protein L13

Chain 59

50S ribosomal protein L6