IL_5E7K_196

3D structure

PDB id

5E7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCAAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5E7K_196 not in the Motif Atlas

Geometric match to IL_5J7L_018

Geometric discrepancy: 0.1133

The information below is about IL_5J7L_018

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

5E7K|1|1G|G|371
5E7K|1|1G|C|372
5E7K|1|1G|A|373
5E7K|1|1G|A|374
5E7K|1|1G|U|375
*
5E7K|1|1G|A|389
5E7K|1|1G|C|390

Current chains

Chain 1G

16S rRNA

Nearby chains

Chain 7A

30S ribosomal protein S16