3D structure

PDB id
5E7K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GA*UCC
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5E7K_275 not in the Motif Atlas
Geometric match to IL_4WF9_032
Geometric discrepancy: 0.0963
The information below is about IL_4WF9_032
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_51454.3
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
45

Unit IDs

5E7K|1|1H|G|862
5E7K|1|1H|A|863
*
5E7K|1|1H|U|913
5E7K|1|1H|C|914
5E7K|1|1H|C|915

Current chains

Chain 1H
23S rRNA

Nearby chains

Chain 16
5S ribosomal RNA; 5S rRNA
Chain 88
50S ribosomal protein L16
Chain H8
50S ribosomal protein L25

Coloring options:


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