IL_5E7K_275
3D structure
- PDB id
- 5E7K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GA*UCC
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5E7K_275 not in the Motif Atlas
- Geometric match to IL_4WF9_032
- Geometric discrepancy: 0.0963
- The information below is about IL_4WF9_032
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_51454.3
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 45
Unit IDs
5E7K|1|1H|G|862
5E7K|1|1H|A|863
*
5E7K|1|1H|U|913
5E7K|1|1H|C|914
5E7K|1|1H|C|915
Current chains
- Chain 1H
- 23S rRNA
Nearby chains
- Chain 16
- 5S ribosomal RNA; 5S rRNA
- Chain 88
- 50S ribosomal protein L16
- Chain H8
- 50S ribosomal protein L25
Coloring options: