IL_5E7K_330

3D structure

PDB id

5E7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCGC*GCGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GCGC,GCGC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5E7K_330 not in the Motif Atlas

Geometric match to IL_1L9A_005

Geometric discrepancy: 0.3669

The information below is about IL_1L9A_005

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5E7K|1|1H|G|2104
5E7K|1|1H|C|2105
5E7K|1|1H|G|2106
5E7K|1|1H|C|2107
*
5E7K|1|1H|G|2182
5E7K|1|1H|C|2183
5E7K|1|1H|G|2184
5E7K|1|1H|C|2185

Current chains

Chain 1H

23S rRNA

Nearby chains

Chain 71

50S ribosomal protein L1