3D structure

PDB id
5E7K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CGCUGAC*GGUGGAG
Length
14 nucleotides
Bulged bases
5E7K|1|14|G|932
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5E7K_377 not in the Motif Atlas
Homologous match to IL_9DFE_024
Geometric discrepancy: 0.1484
The information below is about IL_9DFE_024
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_68243.1
Basepair signature
cWW-L-cWW-cWW-R-L-tHS-cWW
Number of instances in this motif group
1

Unit IDs

5E7K|1|14|C|844
5E7K|1|14|G|845
5E7K|1|14|C|846
5E7K|1|14|U|847
5E7K|1|14|G|848
5E7K|1|14|A|849
5E7K|1|14|C|850
*
5E7K|1|14|G|928
5E7K|1|14|G|929
5E7K|1|14|U|930
5E7K|1|14|G|931
5E7K|1|14|G|932
5E7K|1|14|A|933
5E7K|1|14|G|934

Current chains

Chain 14
23S rRNA

Nearby chains

Chain H5
50S ribosomal protein L30

Coloring options:


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