IL_5E81_018

3D structure

PDB id

5E81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GCAAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5E81_018 not in the Motif Atlas

Geometric match to IL_5J7L_018

Geometric discrepancy: 0.1174

The information below is about IL_5J7L_018

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

5E81|1|13|G|371
5E81|1|13|C|372
5E81|1|13|A|373
5E81|1|13|A|374
5E81|1|13|U|375
*
5E81|1|13|A|389
5E81|1|13|C|390

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 69

50S ribosomal protein L9

Chain 7I

30S ribosomal protein S16