IL_5E81_056

3D structure

PDB id

5E81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

5E81|1|13|C|1400, 5E81|1|13|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5E81_056 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.1942

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

5E81|1|13|C|1399
5E81|1|13|C|1400
5E81|1|13|G|1401
*
5E81|1|13|C|1501
5E81|1|13|A|1502
5E81|1|13|A|1503
5E81|1|13|G|1504

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 2K

Transfer RNA; tRNA

Chain 4K

mRNA