IL_5E81_149

3D structure

PDB id

5E81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GUAGGAUAGG*CCC

Length

13 nucleotides

Bulged bases

5E81|1|14|U|2113

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5E81_149 not in the Motif Atlas

Geometric match to IL_2ZI0_001

Geometric discrepancy: 0.3108

The information below is about IL_2ZI0_001

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

5E81|1|14|G|2110
5E81|1|14|U|2113
5E81|1|14|A|2114
5E81|1|14|G|2115
5E81|1|14|G|2116
5E81|1|14|A|2117
5E81|1|14|U|2118
5E81|1|14|A|2119
5E81|1|14|G|2120
5E81|1|14|G|2121
*
5E81|1|14|C|2177
5E81|1|14|C|2178
5E81|1|14|C|2179

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 13

Small subunit ribosomal RNA; SSU rRNA

Chain 3L

Transfer RNA; tRNA

Chain 79

50S ribosomal protein L1