IL_5E81_168

3D structure

PDB id

5E81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5E81_168 not in the Motif Atlas

Geometric match to IL_7RQB_103

Geometric discrepancy: 0.1594

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5E81|1|14|C|2652
5E81|1|14|U|2653
5E81|1|14|A|2654
5E81|1|14|G|2655
5E81|1|14|U|2656
5E81|1|14|A|2657
5E81|1|14|C|2658
*
5E81|1|14|G|2663
5E81|1|14|G|2664
5E81|1|14|A|2665
5E81|1|14|C|2666
5E81|1|14|C|2667
5E81|1|14|G|2668

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 59

50S ribosomal protein L6