IL_5E81_214
3D structure
- PDB id
- 5E81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- GAGAG*UGGU
- Length
- 9 nucleotides
- Bulged bases
- 5E81|1|1G|A|665
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5E81_214 not in the Motif Atlas
- Homologous match to IL_4LFB_029
- Geometric discrepancy: 0.1015
- The information below is about IL_4LFB_029
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
5E81|1|1G|G|662
5E81|1|1G|A|663
5E81|1|1G|G|664
5E81|1|1G|A|665
5E81|1|1G|G|666
*
5E81|1|1G|U|740
5E81|1|1G|G|741
5E81|1|1G|G|742
5E81|1|1G|U|743
Current chains
- Chain 1G
- 16S ribosomal RNA
Nearby chains
- Chain 52
- 30S ribosomal protein S6
- Chain 6A
- 30S ribosomal protein S15
- Chain 9A
- 30S ribosomal protein S18
Coloring options: