IL_5E81_235

3D structure

PDB id

5E81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CCC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCC,GGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5E81_235 not in the Motif Atlas

Geometric match to IL_3SJ2_002

Geometric discrepancy: 0.1657

The information below is about IL_3SJ2_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

5E81|1|1G|C|1161
5E81|1|1G|C|1162
5E81|1|1G|C|1163
*
5E81|1|1G|G|1173
5E81|1|1G|G|1174
5E81|1|1G|G|1175

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 1I

30S ribosomal protein S10

Chain 62

30S ribosomal protein S7