IL_5E81_237

3D structure

PDB id

5E81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GAUG*CUAAUC

Length

10 nucleotides

Bulged bases

5E81|1|1G|U|1257, 5E81|1|1G|A|1280, 5E81|1|1G|U|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5E81_237 not in the Motif Atlas

Homologous match to IL_4LFB_052

Geometric discrepancy: 0.1485

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

5E81|1|1G|G|1255
5E81|1|1G|A|1256
5E81|1|1G|U|1257
5E81|1|1G|G|1258
*
5E81|1|1G|C|1277
5E81|1|1G|U|1278
5E81|1|1G|A|1279
5E81|1|1G|A|1280
5E81|1|1G|U|1281
5E81|1|1G|C|1282

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 1A

30S ribosomal protein S10

Chain 22

30S ribosomal protein S3

Chain 5A

30S ribosomal protein S14 type Z