IL_5E81_332

3D structure

PDB id

5E81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CAG*CGGG

Length

7 nucleotides

Bulged bases

5E81|1|1H|G|2238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5E81_332 not in the Motif Atlas

Homologous match to IL_7RQB_082

Geometric discrepancy: 0.0777

The information below is about IL_7RQB_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

5E81|1|1H|C|2081
5E81|1|1H|A|2082
5E81|1|1H|G|2083
*
5E81|1|1H|C|2236
5E81|1|1H|G|2237
5E81|1|1H|G|2238
5E81|1|1H|G|2239

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2

Chain 3K

Transfer RNA; tRNA

Chain J8

50S ribosomal protein L28