IL_5E81_372

3D structure

PDB id

5E81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GUU*AAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5E81_372 not in the Motif Atlas

Homologous match to IL_5E81_376

Geometric discrepancy: 0.2303

The information below is about IL_5E81_376

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

5E81|1|1L|G|27
5E81|1|1L|U|28
5E81|1|1L|U|29
*
5E81|1|1L|A|41
5E81|1|1L|A|42
5E81|1|1L|U|43

Current chains

Chain 1L

tRNA-Lys

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA

Chain 1G

Small subunit ribosomal RNA; SSU rRNA