3D structure

PDB id
5EL4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position
Experimental method
X-RAY DIFFRACTION
Resolution
3.15 Å

Loop

Sequence
GAUG*CUAAUC
Length
10 nucleotides
Bulged bases
5EL4|1|13|U|1257, 5EL4|1|13|A|1280, 5EL4|1|13|U|1281
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5EL4_050 not in the Motif Atlas
Homologous match to IL_4LFB_052
Geometric discrepancy: 0.2193
The information below is about IL_4LFB_052
Detailed Annotation
180 degree turn
Broad Annotation
No text annotation
Motif group
IL_11344.2
Basepair signature
cWW-cSS-L-cWW
Number of instances in this motif group
2

Unit IDs

5EL4|1|13|G|1255
5EL4|1|13|A|1256
5EL4|1|13|U|1257
5EL4|1|13|G|1258
*
5EL4|1|13|C|1277
5EL4|1|13|U|1278
5EL4|1|13|A|1279
5EL4|1|13|A|1280
5EL4|1|13|U|1281
5EL4|1|13|C|1282

Current chains

Chain 13
16S ribosomal RNA

Nearby chains

Chain 1I
30S ribosomal protein S10
Chain 2E
30S ribosomal protein S3
Chain 5I
30S ribosomal protein S14 type Z

Coloring options:


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