IL_5EL4_159

3D structure

PDB id

5EL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

5EL4|1|14|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL4_159 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.0852

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

5EL4|1|14|U|2636
5EL4|1|14|U|2637
5EL4|1|14|G|2638
5EL4|1|14|A|2639
5EL4|1|14|G|2640
*
5EL4|1|14|C|2774
5EL4|1|14|A|2775
5EL4|1|14|A|2776
5EL4|1|14|G|2777
5EL4|1|14|A|2778
5EL4|1|14|U|2779
5EL4|1|14|G|2780
5EL4|1|14|A|2781
5EL4|1|14|G|2782

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L13

Chain 29

50S ribosomal protein L3