3D structure

PDB id
5EL4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position
Experimental method
X-RAY DIFFRACTION
Resolution
3.15 Å

Loop

Sequence
GACAAC*GCUAAUC
Length
13 nucleotides
Bulged bases
5EL4|1|1G|U|173
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5EL4_184 not in the Motif Atlas
Homologous match to IL_4LFB_009
Geometric discrepancy: 0.0885
The information below is about IL_4LFB_009
Detailed Annotation
tWH-tWH-tHW-tHW
Broad Annotation
No text annotation
Motif group
IL_12745.1
Basepair signature
cWW-tWH-tWH-tHW-tHW-cWW
Number of instances in this motif group
1

Unit IDs

5EL4|1|1G|G|148
5EL4|1|1G|A|149
5EL4|1|1G|C|150
5EL4|1|1G|A|151
5EL4|1|1G|A|152
5EL4|1|1G|C|153
*
5EL4|1|1G|G|168
5EL4|1|1G|C|169
5EL4|1|1G|U|170
5EL4|1|1G|A|171
5EL4|1|1G|A|172
5EL4|1|1G|U|173
5EL4|1|1G|C|174

Current chains

Chain 1G
16S ribosomal RNA

Nearby chains

Chain BA
30S ribosomal protein S20

Coloring options:


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