IL_5EL4_184

3D structure

PDB id

5EL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

5EL4|1|1G|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL4_184 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.0885

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_12745.1

Basepair signature

cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

1

Unit IDs

5EL4|1|1G|G|148
5EL4|1|1G|A|149
5EL4|1|1G|C|150
5EL4|1|1G|A|151
5EL4|1|1G|A|152
5EL4|1|1G|C|153
*
5EL4|1|1G|G|168
5EL4|1|1G|C|169
5EL4|1|1G|U|170
5EL4|1|1G|A|171
5EL4|1|1G|A|172
5EL4|1|1G|U|173
5EL4|1|1G|C|174

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain BA

30S ribosomal protein S20