IL_5EL4_198

3D structure

PDB id

5EL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

5EL4|1|1G|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL4_198 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.1126

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

5EL4|1|1G|C|569
5EL4|1|1G|G|570
5EL4|1|1G|U|571
5EL4|1|1G|A|572
5EL4|1|1G|A|573
5EL4|1|1G|A|574
5EL4|1|1G|G|575
*
5EL4|1|1G|C|880
5EL4|1|1G|G|881

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 3A

30S ribosomal protein S12

Chain 42

30S ribosomal protein S5

Chain 8A

30S ribosomal protein S17