IL_5EL4_206

3D structure

PDB id

5EL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

5EL4|1|1G|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL4_206 not in the Motif Atlas

Homologous match to IL_4LFB_029

Geometric discrepancy: 0.1189

The information below is about IL_4LFB_029

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5EL4|1|1G|G|662
5EL4|1|1G|A|663
5EL4|1|1G|G|664
5EL4|1|1G|A|665
5EL4|1|1G|G|666
*
5EL4|1|1G|U|740
5EL4|1|1G|G|741
5EL4|1|1G|G|742
5EL4|1|1G|U|743

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 52

30S ribosomal protein S6

Chain 6A

30S ribosomal protein S15

Chain 9A

30S ribosomal protein S18