IL_5EL4_215

3D structure

PDB id

5EL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CCAGG*CCUGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCAGG,CCUGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL4_215 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.371

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

5EL4|1|1G|C|984
5EL4|1|1G|C|985
5EL4|1|1G|A|986
5EL4|1|1G|G|987
5EL4|1|1G|G|988
*
5EL4|1|1G|C|1217
5EL4|1|1G|C|1218
5EL4|1|1G|U|1219
5EL4|1|1G|G|1220
5EL4|1|1G|G|1221

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 5A

30S ribosomal protein S14 type Z

Chain AA

30S ribosomal protein S19